[INFO] fetching crate rdkit-rs 0.1.0...
[INFO] testing rdkit-rs-0.1.0 against master#1f7f8ea0721a3b1eb73e6c6d25cccb371434b320 for pr-154065-1
[INFO] extracting crate rdkit-rs 0.1.0 into /workspace/builds/worker-4-tc1/source
[INFO] started tweaking crates.io crate rdkit-rs 0.1.0
[INFO] finished tweaking crates.io crate rdkit-rs 0.1.0
[INFO] tweaked toml for crates.io crate rdkit-rs 0.1.0 written to /workspace/builds/worker-4-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate rdkit-rs 0.1.0 on toolchain 1f7f8ea0721a3b1eb73e6c6d25cccb371434b320
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1f7f8ea0721a3b1eb73e6c6d25cccb371434b320" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1f7f8ea0721a3b1eb73e6c6d25cccb371434b320" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]      Locking 33 packages to latest compatible versions
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1f7f8ea0721a3b1eb73e6c6d25cccb371434b320" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded rdkit-ffi v0.1.0+rdkit-2022-09-1-pre
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+1f7f8ea0721a3b1eb73e6c6d25cccb371434b320" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] ffe55183339bda8e86f474265fb193f495b6ae7d3cd2a7e8b43203806e260b71
[INFO] running `Command { std: "docker" "start" "-a" "ffe55183339bda8e86f474265fb193f495b6ae7d3cd2a7e8b43203806e260b71", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "ffe55183339bda8e86f474265fb193f495b6ae7d3cd2a7e8b43203806e260b71", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "ffe55183339bda8e86f474265fb193f495b6ae7d3cd2a7e8b43203806e260b71", kill_on_drop: false }`
[INFO] [stdout] ffe55183339bda8e86f474265fb193f495b6ae7d3cd2a7e8b43203806e260b71
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+1f7f8ea0721a3b1eb73e6c6d25cccb371434b320" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 31039c1eb04408ce8910b1b43ea4e6ad44c93e94c0657874f5ba1c691246ca18
[INFO] running `Command { std: "docker" "start" "-a" "31039c1eb04408ce8910b1b43ea4e6ad44c93e94c0657874f5ba1c691246ca18", kill_on_drop: false }`
[INFO] [stderr]    Compiling cxxbridge-flags v1.0.194
[INFO] [stderr]    Compiling foldhash v0.2.0
[INFO] [stderr]    Compiling indexmap v2.13.0
[INFO] [stderr]    Compiling link-cplusplus v1.0.12
[INFO] [stderr]    Compiling syn v2.0.117
[INFO] [stderr]    Compiling cxx v1.0.194
[INFO] [stderr]    Compiling cxxbridge-macro v1.0.194
[INFO] [stderr]    Compiling rdkit-ffi v0.1.0+rdkit-2022-09-1-pre
[INFO] [stderr]    Compiling rdkit-rs v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 9.37s
[INFO] running `Command { std: "docker" "inspect" "31039c1eb04408ce8910b1b43ea4e6ad44c93e94c0657874f5ba1c691246ca18", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "31039c1eb04408ce8910b1b43ea4e6ad44c93e94c0657874f5ba1c691246ca18", kill_on_drop: false }`
[INFO] [stdout] 31039c1eb04408ce8910b1b43ea4e6ad44c93e94c0657874f5ba1c691246ca18
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+1f7f8ea0721a3b1eb73e6c6d25cccb371434b320" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 5b3d4e6a602c6ba91fa02142cae00558f0571db920f38686c26f657dedef0e9f
[INFO] running `Command { std: "docker" "start" "-a" "5b3d4e6a602c6ba91fa02142cae00558f0571db920f38686c26f657dedef0e9f", kill_on_drop: false }`
[INFO] [stderr]    Compiling rdkit-rs v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] error: linking with `cc` failed: exit status: 1
[INFO] [stdout]   |
[INFO] [stdout]   = note:  "cc" "-m64" "/opt/rustwide/target/debug/deps/rustcIY7Ywx/symbols.o" "<2 object files omitted>" "-Wl,--as-needed" "-Wl,-Bstatic" "<sysroot>/lib/rustlib/x86_64-unknown-linux-gnu/lib/{libtest-*,libgetopts-*,librustc_std_workspace_std-*}.rlib" "/opt/rustwide/target/debug/deps/{librdkit_ffi-caee06cedc43b038,libcxx-e1ca4b385e194da2,libfoldhash-40583849f0199317,liblink_cplusplus-55b2bfeccde43cea}.rlib" "<sysroot>/lib/rustlib/x86_64-unknown-linux-gnu/lib/{libstd-*,libpanic_unwind-*,libobject-*,libmemchr-*,libaddr2line-*,libgimli-*,libcfg_if-*,librustc_demangle-*,libstd_detect-*,libhashbrown-*,librustc_std_workspace_alloc-*,libminiz_oxide-*,libadler2-*,libunwind-*,liblibc-*,librustc_std_workspace_core-*,liballoc-*,libcore-*,libcompiler_builtins-*}.rlib" "-Wl,-Bdynamic" "-lstdc++" "-lgcc_s" "-lutil" "-lrt" "-lpthread" "-lm" "-ldl" "-lc" "-L" "/opt/rustwide/target/debug/deps/rustcIY7Ywx/raw-dylibs" "-B<sysroot>/lib/rustlib/x86_64-unknown-linux-gnu/bin/gcc-ld" "-fuse-ld=lld" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-L" "/opt/rustwide/target/debug/build/cxx-86be1f6d7dee9833/out" "-L" "/opt/rustwide/target/debug/build/link-cplusplus-ac37c5b11f1507a3/out" "-L" "<sysroot>/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-o" "/opt/rustwide/target/debug/deps/rdkit_rs-93efd7f40ae1db62" "-Wl,--gc-sections" "-pie" "-Wl,-z,relro,-z,now" "-nodefaultlibs"
[INFO] [stdout]   = note: some arguments are omitted. use `--verbose` to show all linker arguments
[INFO] [stdout]   = note: rust-lld: error: undefined symbol: RDKit$cxxbridge1$194$FMCS_find_mcs
[INFO] [stdout]           >>> referenced by lib.rs:27 (src/lib.rs:27)
[INFO] [stdout]           >>>               rdkit_ffi-caee06cedc43b038.rdkit_ffi.ef86d5eec95e6d79-cgu.0.rcgu.o:(rdkit_ffi::rd::FMCS_find_mcs) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-caee06cedc43b038.rlib
[INFO] [stdout]           
[INFO] [stdout]           rust-lld: error: undefined symbol: RDKit$cxxbridge1$194$ROMolPtrVec_new
[INFO] [stdout]           >>> referenced by lib.rs:15 (src/lib.rs:15)
[INFO] [stdout]           >>>               rdkit_ffi-caee06cedc43b038.rdkit_ffi.ef86d5eec95e6d79-cgu.0.rcgu.o:(rdkit_ffi::rd::ROMolPtrVec_new) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-caee06cedc43b038.rlib
[INFO] [stdout]           
[INFO] [stdout]           rust-lld: error: undefined symbol: RDKit$cxxbridge1$194$MCSResult_num_atoms
[INFO] [stdout]           >>> referenced by lib.rs:28 (src/lib.rs:28)
[INFO] [stdout]           >>>               rdkit_ffi-caee06cedc43b038.rdkit_ffi.ef86d5eec95e6d79-cgu.0.rcgu.o:(rdkit_ffi::rd::MCSResult_num_atoms) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-caee06cedc43b038.rlib
[INFO] [stdout]           
[INFO] [stdout]           rust-lld: error: undefined symbol: RDKit$cxxbridge1$194$MCSResult_num_bonds
[INFO] [stdout]           >>> referenced by lib.rs:29 (src/lib.rs:29)
[INFO] [stdout]           >>>               rdkit_ffi-caee06cedc43b038.rdkit_ffi.ef86d5eec95e6d79-cgu.0.rcgu.o:(rdkit_ffi::rd::MCSResult_num_bonds) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-caee06cedc43b038.rlib
[INFO] [stdout]           
[INFO] [stdout]           rust-lld: error: undefined symbol: RDKit$cxxbridge1$194$RWMol_get_num_atoms
[INFO] [stdout]           >>> referenced by lib.rs:11 (src/lib.rs:11)
[INFO] [stdout]           >>>               rdkit_ffi-caee06cedc43b038.rdkit_ffi.ef86d5eec95e6d79-cgu.0.rcgu.o:(rdkit_ffi::rd::RWMol_get_num_atoms) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-caee06cedc43b038.rlib
[INFO] [stdout]           
[INFO] [stdout]           rust-lld: error: undefined symbol: RDKit$cxxbridge1$194$RWMol_get_num_bonds
[INFO] [stdout]           >>> referenced by lib.rs:13 (src/lib.rs:13)
[INFO] [stdout]           >>>               rdkit_ffi-caee06cedc43b038.rdkit_ffi.ef86d5eec95e6d79-cgu.0.rcgu.o:(rdkit_ffi::rd::RWMol_get_num_bonds) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-caee06cedc43b038.rlib
[INFO] [stdout]           
[INFO] [stdout]           rust-lld: error: undefined symbol: RDKit$cxxbridge1$194$SmilesParse_smi_to_mol
[INFO] [stdout]           >>> referenced by lib.rs:7 (src/lib.rs:7)
[INFO] [stdout]           >>>               rdkit_ffi-caee06cedc43b038.rdkit_ffi.ef86d5eec95e6d79-cgu.0.rcgu.o:(rdkit_ffi::rd::SmilesParse_smi_to_mol) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-caee06cedc43b038.rlib
[INFO] [stdout]           
[INFO] [stdout]           rust-lld: error: undefined symbol: RDKit$cxxbridge1$194$MCSResult_smarts_string
[INFO] [stdout]           >>> referenced by lib.rs:30 (src/lib.rs:30)
[INFO] [stdout]           >>>               rdkit_ffi-caee06cedc43b038.rdkit_ffi.ef86d5eec95e6d79-cgu.0.rcgu.o:(rdkit_ffi::rd::MCSResult_smarts_string) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-caee06cedc43b038.rlib
[INFO] [stdout]           
[INFO] [stdout]           rust-lld: error: undefined symbol: RDKit$cxxbridge1$194$MorganFP_get_fingerprint
[INFO] [stdout]           >>> referenced by lib.rs:22 (src/lib.rs:22)
[INFO] [stdout]           >>>               rdkit_ffi-caee06cedc43b038.rdkit_ffi.ef86d5eec95e6d79-cgu.0.rcgu.o:(rdkit_ffi::rd::MorganFP_get_fingerprint) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-caee06cedc43b038.rlib
[INFO] [stdout]           
[INFO] [stdout]           rust-lld: error: undefined symbol: RDKit$cxxbridge1$194$ROMolPtrVec_emplace_back
[INFO] [stdout]           >>> referenced by lib.rs:16 (src/lib.rs:16)
[INFO] [stdout]           >>>               rdkit_ffi-caee06cedc43b038.rdkit_ffi.ef86d5eec95e6d79-cgu.0.rcgu.o:(rdkit_ffi::rd::ROMolPtrVec_emplace_back) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-caee06cedc43b038.rlib
[INFO] [stdout]           
[INFO] [stdout]           rust-lld: error: undefined symbol: RDKit$cxxbridge1$194$RWMol_get_num_heavy_atoms
[INFO] [stdout]           >>> referenced by lib.rs:12 (src/lib.rs:12)
[INFO] [stdout]           >>>               rdkit_ffi-caee06cedc43b038.rdkit_ffi.ef86d5eec95e6d79-cgu.0.rcgu.o:(rdkit_ffi::rd::RWMol_get_num_heavy_atoms) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-caee06cedc43b038.rlib
[INFO] [stdout]           
[INFO] [stdout]           rust-lld: error: undefined symbol: RDKit$cxxbridge1$194$MorganFP_get_nonzero_elements_size
[INFO] [stdout]           >>> referenced by lib.rs:23 (src/lib.rs:23)
[INFO] [stdout]           >>>               rdkit_ffi-caee06cedc43b038.rdkit_ffi.ef86d5eec95e6d79-cgu.0.rcgu.o:(rdkit_ffi::rd::MorganFP_get_nonzero_elements_size) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-caee06cedc43b038.rlib
[INFO] [stdout]           
[INFO] [stdout]           rust-lld: error: undefined symbol: cxxbridge1$shared_ptr$RDKit$RWMol$drop
[INFO] [stdout]           >>> referenced by lib.rs:7 (src/lib.rs:7)
[INFO] [stdout]           >>>               rdkit_ffi-caee06cedc43b038.rdkit_ffi.ef86d5eec95e6d79-cgu.0.rcgu.o:(<rdkit_ffi::rd::RWMol as cxx::shared_ptr::SharedPtrTarget>::__drop) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-caee06cedc43b038.rlib
[INFO] [stdout]           
[INFO] [stdout]           rust-lld: error: undefined symbol: cxxbridge1$unique_ptr$RDKit$ROMolPtrVec$raw
[INFO] [stdout]           >>> referenced by lib.rs:15 (src/lib.rs:15)
[INFO] [stdout]           >>>               rdkit_ffi-caee06cedc43b038.rdkit_ffi.ef86d5eec95e6d79-cgu.0.rcgu.o:(<rdkit_ffi::rd::ROMolPtrVec as cxx::unique_ptr::UniquePtrTarget>::__raw) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-caee06cedc43b038.rlib
[INFO] [stdout]           
[INFO] [stdout]           rust-lld: error: undefined symbol: cxxbridge1$unique_ptr$RDKit$ROMolPtrVec$drop
[INFO] [stdout]           >>> referenced by lib.rs:15 (src/lib.rs:15)
[INFO] [stdout]           >>>               rdkit_ffi-caee06cedc43b038.rdkit_ffi.ef86d5eec95e6d79-cgu.0.rcgu.o:(<rdkit_ffi::rd::ROMolPtrVec as cxx::unique_ptr::UniquePtrTarget>::__drop) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-caee06cedc43b038.rlib
[INFO] [stdout]           
[INFO] [stdout]           rust-lld: error: undefined symbol: cxxbridge1$unique_ptr$RDKit$MorganFingerprint$raw
[INFO] [stdout]           >>> referenced by lib.rs:22 (src/lib.rs:22)
[INFO] [stdout]           >>>               rdkit_ffi-caee06cedc43b038.rdkit_ffi.ef86d5eec95e6d79-cgu.0.rcgu.o:(<rdkit_ffi::rd::MorganFingerprint as cxx::unique_ptr::UniquePtrTarget>::__raw) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-caee06cedc43b038.rlib
[INFO] [stdout]           
[INFO] [stdout]           rust-lld: error: undefined symbol: cxxbridge1$unique_ptr$RDKit$MorganFingerprint$drop
[INFO] [stdout]           >>> referenced by lib.rs:22 (src/lib.rs:22)
[INFO] [stdout]           >>>               rdkit_ffi-caee06cedc43b038.rdkit_ffi.ef86d5eec95e6d79-cgu.0.rcgu.o:(<rdkit_ffi::rd::MorganFingerprint as cxx::unique_ptr::UniquePtrTarget>::__drop) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-caee06cedc43b038.rlib
[INFO] [stdout]           
[INFO] [stdout]           rust-lld: error: undefined symbol: cxxbridge1$unique_ptr$RDKit$MCSResult$raw
[INFO] [stdout]           >>> referenced by lib.rs:27 (src/lib.rs:27)
[INFO] [stdout]           >>>               rdkit_ffi-caee06cedc43b038.rdkit_ffi.ef86d5eec95e6d79-cgu.0.rcgu.o:(<rdkit_ffi::rd::MCSResult as cxx::unique_ptr::UniquePtrTarget>::__raw) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-caee06cedc43b038.rlib
[INFO] [stdout]           
[INFO] [stdout]           rust-lld: error: undefined symbol: cxxbridge1$unique_ptr$RDKit$MCSResult$drop
[INFO] [stdout]           >>> referenced by lib.rs:27 (src/lib.rs:27)
[INFO] [stdout]           >>>               rdkit_ffi-caee06cedc43b038.rdkit_ffi.ef86d5eec95e6d79-cgu.0.rcgu.o:(<rdkit_ffi::rd::MCSResult as cxx::unique_ptr::UniquePtrTarget>::__drop) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-caee06cedc43b038.rlib
[INFO] [stdout]           collect2: error: ld returned 1 exit status
[INFO] [stdout]           
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr] error: could not compile `rdkit-rs` (lib test) due to 1 previous error
[INFO] running `Command { std: "docker" "inspect" "5b3d4e6a602c6ba91fa02142cae00558f0571db920f38686c26f657dedef0e9f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "5b3d4e6a602c6ba91fa02142cae00558f0571db920f38686c26f657dedef0e9f", kill_on_drop: false }`
[INFO] [stdout] 5b3d4e6a602c6ba91fa02142cae00558f0571db920f38686c26f657dedef0e9f
